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Documentation for https://github.com/chgibb/phat

PHAT 0.7.9

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Changelog

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81 Commits Since Last Release (0.7.7) (most recent last)

Chris Gibb: updated lockfile
Chris Gibb: localized requires to reduce some bundle sizes
Chris Gibb: Merge pull request #728 from chgibb/requireOpt localized requires to reduce some bundle sizes
Chris Gibb: Update README.md
Chris Gibb: Merge pull request #731 from chgibb/blast Update README.md
Chris Gibb: added gui test for read inputting
Chris Gibb: Merge branch ‘blast’ of https://github.com/chgibb/phat into blast
Chris Gibb: removed import
Chris Gibb: fixed inputs not selected in tests
Chris Gibb: started gui tests for aligning reads
Chris Gibb: select first two read files in test
Chris Gibb: broke ref selecting into module
Chris Gibb: changed return type
Chris Gibb: trigger alignment and wait for success
Chris Gibb: started gui test for alignment viewing
Chris Gibb: removed auto import
Chris Gibb: cleaned up formatting and commented gui test modules
Chris Gibb: renamed module and added checkbox toggles
Chris Gibb: added rest of the checkbox toggles
Chris Gibb: open SNP table after checkboxs
Chris Gibb: added delay
Chris Gibb: close tabs and index ref for vis
Chris Gibb: circle back to SNP table after indexing
Chris Gibb: fixed symbol leak
Chris Gibb: view SNPs after navigating back
Chris Gibb: view all snps, intermittently closing viewers
Chris Gibb: gui test to open genome builder
Chris Gibb: Merge branch ‘master’ into blast
Chris Gibb: cleaned up promise return types
Chris Gibb: commented method
Chris Gibb: added progress callback
Chris Gibb: refactored and added cb
Chris Gibb: progress callback interval
Chris Gibb: Merge pull request #732 from chgibb/blast GUI Tests Overhaul
Chris Gibb: Merge pull request #733 from chgibb/master Update Feature Branch
Chris Gibb: Merge branch ‘saveProgress’ of https://github.com/chgibb/phat into saveProgress
Chris Gibb: update caller with progress
Chris Gibb: indicate save progress to user
Chris Gibb: renamed operation
Chris Gibb: removed old svg export code
Chris Gibb: removed imports
Chris Gibb: renamed remaining symbols
Chris Gibb: Merge pull request #734 from chgibb/saveProgress Save Progress
Chris Gibb: removed file
Chris Gibb: use ngPlasmid to build exported SVG
Chris Gibb: removed method
Chris Gibb: Merge branch ‘master’ into svgExporting
Chris Gibb: moved Plasmid up object heirarchy
Chris Gibb: typed track $scope
Chris Gibb: added seq selector prop classes and new map scope builder
Chris Gibb: fixed arg requirements in scope builder and fixed all literal scope creations
Chris Gibb: added props from interface to class
Chris Gibb: removed old styles
Chris Gibb: updated ngplasmid version
Chris Gibb: removed jsdoc with vulnerable dep and updated package-lock
Chris Gibb: updated link
Chris Gibb: updated readme
Chris Gibb: removed link
Chris Gibb: Merge branch ‘master’ into svgExporting
Chris Gibb: Merge pull request #735 from chgibb/svgExporting Overhauled SVG Exporting
Chris Gibb: updated ngplasmid
Chris Gibb: initial one arm static seq selection
Chris Gibb: fixed right arm
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: moved base figure to bottom layer, fixed canvas dimensions
Chris Gibb: fixed arrow colour, added method to figurecanvas, added last seq selection template
Chris Gibb: fixed radius updates seq selection object construction
Chris Gibb: Merge branch ‘segmentSelection’ into master
Chris Gibb: Merge pull request #738 from chgibb/master Update Feature Branch
Chris Gibb: fixed formatting
Chris Gibb: hide sequence selector behind keypress
Chris Gibb: Merge pull request #739 from chgibb/segmentSelection Segment selection
Chris Gibb: Merge pull request #737 from chgibb/master Save Progress and Fixed SVG Exporting
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Merge pull request #740 from chgibb/beta-staging Save Progress and Fixed SVG Exporting
Chris Gibb: Bumped to 0.7.9-beta.1
Chris Gibb: Merge branch ‘stable-staging’ into beta
Chris Gibb: Merge pull request #741 from chgibb/beta Promote 0.7.9-beta.1 to Stable
Chris Gibb: Merge branch ‘stable’ into stable-staging
RobJackson28: Merge pull request #742 from chgibb/stable-staging Promote 0.7.9-beta.1 to Stable
Chris Gibb: Bumped to 0.7.9