PHAT 0.12.0-beta.4
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Changelog
- Genome builder UI rewrite
39 Commits Since Last Release (0.12.0-beta.2) (most recent last)
chgibb: initial prototyping
chgibb: factored out chart
chgibb: ref to var snp doughnut chart
chgibb: lint
chgibb: fixed uneccessary updates
chgibb: lint
chgibb: made chartjs external
chgibb: renamed folder
chgibb: initial form
chgibb: bumped mui version
chgibb: show scanned reads progress and approximate amount to BLAST
chgibb: index refs for vis before alignments
chgibb: outlined input based on mui docs
chgibb: mui component wrappers
chgibb: stylize inputs
chgibb: get total bp from reference
chgibb: lint
chgibb: set cache locations seperately
chgibb: fixed flag pass through
chgibb: pad out text in cards
chgibb: stop enabling form by default
chgibb: added start button and fixed spacing
chgibb: fixed button spacing
chgibb: pass through flag to step2
chgibb: trigger BLAST onclick
chgibb: initial qc doughnut
Chris Gibb: Update README.md
Chris Gibb: Merge branch ‘master’ into charting
Chris Gibb: Merge pull request #900 from chgibb/charting Initial Summary Charts
Chris Gibb: Merge branch ‘master’ into blast-form
Chris Gibb: Merge branch ‘master’ into qc-doughnut
chgibb: fixed chart
chgibb: lint
Chris Gibb: Merge pull request #904 from chgibb/blast-form BLAST Form
chgibb: Merge branch ‘qc-doughnut’
chgibb: added logging
Chris Gibb: Merge pull request #908 from chgibb/master 0.12.0-beta.3
Chris Gibb: Merge pull request #909 from chgibb/beta-staging 0.12.0-beta.3
Chris Gibb: Bumped to 0.12.0-beta.3
137 Commits Since Last Release (0.12.0-beta.3) (most recent last)
chgibb: installed package
chgibb: initial plumbing and drawer
chgibb: start refactoring figure templating
chgibb: initial rendering layer
chgibb: factor out drawer and add icons
chgibb: expose more icons
chgibb: generic, moveable overlay
chgibb: draggable overlay modal and close buttons
chgibb: clip overlay drawers underneath appbar
chgibb: lint
chgibb: lint
chgibb: fixed repositioning
chgibb: justify icons right
chgibb: hoist figure lookup and show title in appbar
chgibb: expose tooltip
chgibb: added tooltips to icons
chgibb: lint
Chris Gibb: Update README.md
chgibb: fix hovering and background on figure name in appbar
chgibb: edit figure name overlay
chgibb: converted to class
chgibb: optionally restrict overlay type
chgibb: lint
chgibb: keep base figure in memory instead of round tripping to disk
chgibb: added mui lab
chgibb: exposed components
chgibb: use tree view instead of nested grids for figure select
chgibb: lint
chgibb: added react-draggable to excludes
chgibb: create figure item and prevent renaming to empty string
chgibb: fix nulls in treeview
chgibb: prevent creating figure for unindexed fasta
chgibb: lint
chgibb: refactor dir structure. Start undo redo
chgibb: fix action model
chgibb: factor out changename
chgibb: factor out large components
chgibb: lint
chgibb: initial edit contigs overlay
chgibb: initial single contig edit
chgibb: lint
chgibb: added react-color
chgibb: include colour picker and pass through contig text change
chgibb: contig body colour change
chgibb: lint
chgibb: close overlay after selection
chgibb: implement no top and bottom restrictions and add them to edit contigs overlay
chgibb: lint
chgibb: change contig text colour
chgibb: factored out colour picker
chgibb: lint
chgibb: edit contig opacity
chgibb: lint
chgibb: make base track invisible
chgibb: edit vadjust
chgibb: create and edit custom contigs
chgibb: fix flag for ref contigs
chgibb: start position change edit
chgibb: lint
chgibb: edit start and end
chgibb: edit radius
chgibb: expose components
chgibb: toggle interval labels
chgibb: lint
chgibb: edit interval length and label direction
chgibb: lint
chgibb: renamed method
chgibb: edit interval label vadjust
chgibb: renamed file
chgibb: respect restrictions for no left and right drawers
chgibb: start to flesh out coverage track overlay
chgibb: lint
chgibb: left justify switch headers
chgibb: optionally disable clickable cells on table
chgibb: fixed overlay updates
chgibb: fixed modal text bug and allow modals for coverage track overlay
chgibb: remove overlay restriction
chgibb: disable horizontal scroll on overlays
chgibb: lint
chgibb: refactored some overlay structures
chgibb: lint
chgibb: factored out contig tree
chgibb: move table title into prop
chgibb: lint
chgibb: renamed component
chgibb: build tree inline
chgibb: lint
chgibb: start to build out contig creation
chgibb: refactored to barrel
chgibb: begin coverage track form
chgibb: lint
chgibb: empty step2
chgibb: flesh out step2
chgibb: lint
chgibb: added labels and flesh out step3
chgibb: lint
chgibb: trigger coverage track render on click and pass through dismissal
chgibb: expose icons
chgibb: toggle icon by track visibility
chgibb: lint
chgibb: load and render coverage tracks
chgibb: lint
chgibb: ignore react-color
chgibb: fixed toggle rollback
chgibb: clear before rerendering
chgibb: reposition children when dimensions change
chgibb: only update canvases on changes
chgibb: fixed rerender behaviour for resizes and edits
chgibb: force tree rebuild on figure change
chgibb: fold layer functionality into circulargenome
chgibb: lint
chgibb: fixed text colour in appbar
chgibb: exposed icon
chgibb: allow figure copying through ui
chgibb: expose icon
chgibb: copy and delete dialogs
chgibb: removed unused imports
chgibb: fixed linter
chgibb: fixed genome builder smoke test
Chris Gibb: Merge branch ‘master’ into mui-genome-builder-no-layers
Chris Gibb: Merge pull request #926 from chgibb/mui-genome-builder-no-layers Mui Genome Builder
dependabot[bot]: Bump bootstrap from 4.1.2 to 4.3.1 Bumps [bootstrap](https://github.com/twbs/bootstrap) from 4.1.2 to 4.3.1. - [Release notes](https://github.com/twbs/bootstrap/releases) - [Commits](https://github.com/twbs/bootstrap/compare/v4.1.2…v4.3.1) Signed-off-by: dependabot[bot] support@github.com
Chris Gibb: Merge pull request #925 from chgibb/dependabot/npm_and_yarn/bootstrap-4.3.1 Bump bootstrap from 4.1.2 to 4.3.1
chgibb: hoist out plasmid cache and remove unused canvases
chgibb: only rerender on scope changes
chgibb: fix some canvas positioning
chgibb: page out unused plasmids
chgibb: fixed linter
chgibb: bumped electron to latest 3.x
chgibb: fixed call site where unused arg was removed
Chris Gibb: Merge pull request #927 from chgibb/genome-builder-page-out Genome Builder Memory Improvements
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge branch ‘master’ into electron3
Chris Gibb: Merge pull request #928 from chgibb/electron3 Upgrade to Electron 3
Chris Gibb: Merge pull request #929 from chgibb/master 0.12.0-beta.4
Chris Gibb: Merge pull request #931 from chgibb/beta-staging 0.12.0-beta.4
Chris Gibb: Bumped to 0.12.0-beta.4