PHAT 0.10.0-beta.1
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Changelog
- Hisat2 can now be selected as an aligner in addition to Bowtie2
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44 Commits Since Last Release (0.9.2-beta.1) (most recent last)
Chris Gibb: Update README.md
Chris Gibb: Merge pull request #821 from chgibb/beta Backport Merges and Version
Chris Gibb: Merge pull request #822 from chgibb/beta Promote 0.9.2-beta.1 to Stable
Chris Gibb: Merge pull request #823 from chgibb/stable-staging Promote 0.9.2-beta.1 to Stable
Chris Gibb: Bumped to 0.9.2
Chris Gibb: Update README.md
Chris Gibb: Merge pull request #824 from chgibb/stable Backport Merges and Version
Chris Gibb: bumped version
Chris Gibb: renamed operation
Chris Gibb: override vscode file watcher settings
Chris Gibb: index fasta prior to alignment
Chris Gibb: removed old smoke test step and fixed wait for nonexistent operation
Chris Gibb: remove redundant asyncs
Chris Gibb: remove ref indexing from gui
Chris Gibb: initial hisat2 download and bundling
Chris Gibb: ignore compiled sources in editor
Chris Gibb: normalize naming for alignments and start adding hisat2 specific plumbing code
Chris Gibb: normalize more path and file names. Hisat2 index and build plumbing. Start hisat2 index tests
Chris Gibb: include failed index file in error message
Chris Gibb: hisat2 indexing operation plumbing
Chris Gibb: don’t require writing of rev.x.ht2 indices
Chris Gibb: expand file exclusion lists
Chris Gibb: hisat2 hpv18 index and hpv16 alignment tests
Chris Gibb: L6R1 hpv16 and hpv18 hisat2 tests
Chris Gibb: fixed typing
Chris Gibb: fixed glob to ignore compiler artifacts
Chris Gibb: fixed hisat2 path quoting
Chris Gibb: refactored promise chains and tightened test success criteria for alignments
Chris Gibb: show aligner used in output and genome builder
Chris Gibb: expanded modal to fit wider tables. Fixed modal transition error
chgibb: initial hisat2 windows bundling
chgibb: ignore app directoy in vscode
chgibb: explicitly reject and resolve
chgibb: changed quote use and use of perl
chgibb: reject on error
chgibb: explicitly return
chgibb: download linux version on windows for invoke script. Clean artifacts after copying out needed files
chgibb: download hisat2 archives on start
Chris Gibb: converted tab to spaces
Chris Gibb: removed old invoke method
Chris Gibb: Merge pull request #825 from chgibb/hisat2 Hisat2
Chris Gibb: Merge pull request #827 from chgibb/master 0.10.0-beta.1
Chris Gibb: Merge pull request #828 from chgibb/beta-staging 0.10.0-beta.1
Chris Gibb: Bumped to 0.10.0-beta.1