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PHAT 0.1.1

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Changelog

202 Commits Since Last Release (0.0.51) (most recent last)

Chris Gibb: removed old code
Chris Gibb: Fixed method typo
Chris Gibb: Typed props/methods expected by figures at runtime
Chris Gibb: Bumped electron, electron-packager and node types
Chris Gibb: Cast to eventemitter before call
Chris Gibb: changed event types
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: typed params
Chris Gibb: Changed types
Chris Gibb: cast before access
Chris Gibb: cast before access
Chris Gibb: cast before access
Chris Gibb: cast before access
scs97liu: Added new images for Icons/Buttons
Chris Gibb: Moved devdep to optdep
Chris Gibb: Merge branch ‘master’ into Icon/Button-Additions
Chris Gibb: removed script
Chris Gibb: cast global
Chris Gibb: fixed namespace refs
Chris Gibb: exlucde electron when bundling
Chris Gibb: Merge pull request #556 from chgibb/master Backport Fix
Chris Gibb: Merge pull request #555 from chgibb/Icon/Button-Additions Added new images for Icons/Buttons
Chris Gibb: Updated
Chris Gibb: Renamed
Chris Gibb: Renamed files
Chris Gibb: Renamed
Chris Gibb: Renamed
Chris Gibb: Merge branch ‘master’ into electronBump
Chris Gibb: Added new buttons to view
Chris Gibb: Removed old module
Chris Gibb: Added new images to view
Chris Gibb: Added new images
Chris Gibb: Added new image
Chris Gibb: Added new button
Chris Gibb: Added new image
Chris Gibb: Added new images
Chris Gibb: Merge pull request #560 from chgibb/newButtons New Button Images
Chris Gibb: Merge branch ‘master’ into electronBump
Chris Gibb: Removed token check
Chris Gibb: Removed unused import
Chris Gibb: added logging
Chris Gibb: Stop trying to exit on failure
Chris Gibb: Fixed typo
chgibb: ignore repo size warnings
chgibb: refactored resolution timings
Chris Gibb: Merge pull request #561 from chgibb/authToken Removed Auth Token
Chris Gibb: Merge branch ‘master’ into electronBump
Chris Gibb: Merge pull request #558 from chgibb/electronBump Bump Electron to 1.6.11
Chris Gibb: Bumped to 0.1.0-beta.1
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #562 from chgibb/master Bumped Electron Version, Incorporated New Images
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Merge pull request #563 from chgibb/beta-staging 0.1.0-beta.1
Chris Gibb: Merge branch ‘stable-staging’ into beta
chgibb: Fixed icons
Chris Gibb: Merge pull request #564 from chgibb/beta Promote 0.1.0-beta.1 to 0.1.0
Chris Gibb: Bumped to 0.1.0
Chris Gibb: Merge branch ‘stable’ into stable-staging
Chris Gibb: Merge pull request #565 from chgibb/523 523
Chris Gibb: Merge pull request #566 from chgibb/stable-staging Promote 0.1.0-beta.1 to 0.1.0
RobJackson28: Added images
Chris Gibb: Merge pull request #567 from chgibb/RobJackson28-patch-1 Added images
RobJackson28: Removed toolbar image
Chris Gibb: Merge pull request #568 from chgibb/RobJackson28-patch-2 Removed toolbar image
RobJackson28: Updated image
Chris Gibb: Merge pull request #569 from chgibb/RobJackson28-patch-3 Updated image
RobJackson28: Added landing text
Chris Gibb: Merge pull request #570 from chgibb/RobJackson28-patch-4 Added landing text
RobJackson28: Updated text
Chris Gibb: Merge pull request #571 from chgibb/RobJackson28-patch-5 Updated text
Chris Gibb: Updated
Chris Gibb: Refactored coverage rendering to use promises
Chris Gibb: Removed path prop
Chris Gibb: Proto methods to assemble ready to compile templates
Chris Gibb: Fixed path
Chris Gibb: Use assemble methods
Chris Gibb: added cache reset flag
Chris Gibb: export flag
Chris Gibb: Added package
Chris Gibb: set worker node integration by default
Chris Gibb: make it possible for operations to ignore the scheduler and run anyway
Chris Gibb: Prototype template compiler operation
Chris Gibb: Moved template assembly to compiler process
Chris Gibb: Refactored to cache SVGs instead of templates
Chris Gibb: fixed typos in method invoke
Chris Gibb: disallow multiple compilations for the same track
Chris Gibb: Updated
Chris Gibb: Removed all auth token use
Chris Gibb: Merge pull request #573 from chgibb/572 572
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #574 from chgibb/master 572
Chris Gibb: Bumped to 0.1.1-beta.1
Chris Gibb: Proto svg compiling, injecting
Chris Gibb: Restored original template cache
Chris Gibb: restored displayfigure
Chris Gibb: restored genomeview
Chris Gibb: restored masterview
Chris Gibb: restored genome builderenderer
Chris Gibb: Refactored to use template assembly method
Chris Gibb: recompile coverage tracks on radius change
Chris Gibb: Working AOT compilation to SVG for coverate tracks
Chris Gibb: stop being clever about job queuing
Chris Gibb: added removetrack method to remove svgs from cache
Chris Gibb: remove recompiled svg from cache to force a rerender
Chris Gibb: Merge pull request #576 from chgibb/beta-staging 572
Chris Gibb: Show pending tracks to recompile in top bar
Chris Gibb: Bumped to 0.1.1-beta.2
Chris Gibb: Throw on errors
Chris Gibb: stop auto closing log
Chris Gibb: Added snp support
Chris Gibb: Test coverage track to SVG compilation
Chris Gibb: stop rendering twice
Chris Gibb: force recompile including hidden tracks, use figure in arg to compile against
Chris Gibb: work around for angular scope issue
Chris Gibb: only rerender for tracks in the currently open figure
Chris Gibb: Serialize entire div instead of just first child when exporting to SVG
Chris Gibb: Merge branch ‘master’ into genomeBuilderSVG
Chris Gibb: Removed module
Chris Gibb: Handle accidental figure cloning caused by deferred angular compilation, caused by angular scope undefined bug
Chris Gibb: Broke centering into module
Chris Gibb: Merge branch ‘genomeBuilderSVG’ of https://github.com/chgibb/phat into genomeBuilderSVG
Chris Gibb: Merge pull request #579 from chgibb/genomeBuilderSVG Genome Builder Rendering Overhaul
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #581 from chgibb/master Genome Builder Rendering Overhaul
Chris Gibb: Bumped to 0.1.1-beta.3
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Merge pull request #582 from chgibb/beta-staging Genome Builder Rendering Overhaul
Chris Gibb: Stop passing SVGs through angular on each recompile
Chris Gibb: Broke methods into module
chgibb: Fixed condition
Chris Gibb: Merge branch ‘master’ into genomeBuilderSVG
Chris Gibb: Merge pull request #584 from chgibb/genomeBuilderSVG 583
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #585 from chgibb/master 583
Chris Gibb: Bumped to 0.1.1-beta.4
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Fixed SVG exporting
Chris Gibb: Merge pull request #586 from chgibb/beta-staging 583
Chris Gibb: Moved v8 flags into main. Added expose_gc
Chris Gibb: Allow open project to ignore scheduler
Chris Gibb: Allow open log viewer to ignore scheduler
Chris Gibb: Allow open pileup viewer to ignore scheduler
Chris Gibb: Allow file inputting to ignore scheduler
Chris Gibb: Stop ignoring scheduler
Chris Gibb: Stop ignoring scheduler
Chris Gibb: Fixed invoke for operations which ignore scheduler
Chris Gibb: Added success message for test
Chris Gibb: Refactored operation logging away from streams
Chris Gibb: Merge branch ‘master’ into genomeBuilderSVG
Chris Gibb: Merge pull request #589 from chgibb/genomeBuilderSVG 588
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #590 from chgibb/master 588
Chris Gibb: Bumped to 0.1.1-beta.4
Chris Gibb: Bumped to 0.1.1-beta.4
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Merge pull request #591 from chgibb/beta-staging 588
Chris Gibb: Bumped to 0.1.1-beta.5
chgibb: Save logrecord after completion
Chris Gibb: Merge pull request #594 from chgibb/588 Fix for 588
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #595 from chgibb/master 588
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Merge pull request #596 from chgibb/beta-staging 588
Chris Gibb: Bumped to 0.1.1-beta.6
RobJackson28: New installer animation for PHAT
Chris Gibb: Merge pull request #597 from chgibb/RobJackson28-patch-6 New installer animation for PHAT
Chris Gibb: Merge pull request #598 from chgibb/master Update Feature Branch
Chris Gibb: Updated
Chris Gibb: clean artifacts on bundle failure
Chris Gibb: Stop ignoring missing. Exclude package.json
Chris Gibb: add stack traces to failures
Chris Gibb: bumped ng-node-compile version
Chris Gibb: revert back to previous behaviour
Chris Gibb: require modules to force bundling
Chris Gibb: Rename node_modules during testing to prevent module resolution from walking up the directory tree and resolving bundle errors
Chris Gibb: Stop requireing angular and angularplasmid
Chris Gibb: stop logging event 3 times
Chris Gibb: updated package
Chris Gibb: force bundle angularplasmid into compileTemplateProcess on build
Chris Gibb: Bumped package version
Chris Gibb: Move to forked angularplasmid
Chris Gibb: implictly bundle forked angularplasmid
Chris Gibb: Changes refs to angularplasmid to forked version
Chris Gibb: Merge pull request #600 from chgibb/588 588
Chris Gibb: Merge branch ‘beta-staging’ into master
Chris Gibb: Merge pull request #601 from chgibb/master 588
Chris Gibb: Merge branch ‘beta’ into beta-staging
Chris Gibb: Merge pull request #602 from chgibb/beta-staging 588
Chris Gibb: Bumped to 0.1.1-beta.7
Chris Gibb: Merge branch ‘stable-staging’ into beta
Chris Gibb: Merge pull request #604 from chgibb/beta Promote 0.1.1-beta.7 to 0.1.1
Chris Gibb: Merge branch ‘stable’ into stable-staging
Chris Gibb: Merge pull request #605 from chgibb/stable-staging Promote 0.1.1-beta.7 to 0.1.1
Chris Gibb: Bumped to 0.1.1