PHAT 0.0.51

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• Windows Installer
• Ubuntu Linux Debian Package
• Windows Portable
• Linux Portable

  Experimental

• Red Hat Package Manager

Documentation for This Release

• Documentation

Browse Source Code for This Release

• Source for PHAT@0.0.51
• Source for PHAT

Changelog

• Expanded input filters for file extensions #451
• Fix for critical bug #540. PHAT@0.0.50 was taken down as a result.
• Added “Go Back” navigation buttons to top of overall alignment and SNP reports #459
• Fix for broken QC reports in exported projects
• Fix for #543
• Fix for#531

  188 Commits Since Last Release (0.0.44) (most recent last)

  Chris Gibb: Updated
  Chris Gibb: refactored to use promises
  Chris Gibb: moved import check into promise
  Chris Gibb: moved file importing into operation
  Chris Gibb: broke function into module
  Chris Gibb: Change path to show in project if file was imported
  Chris Gibb: added null checks
  Chris Gibb: added semicolon
  Chris Gibb: Bumped to 0.0.50-beta.1
  Chris Gibb: Show currently open project
  Chris Gibb: moved module
  Chris Gibb: fixed imports
  Chris Gibb: Merge pull request #512 from chgibb/master Bumped to 0.0.50-beta.1
  Chris Gibb: refactored prop init in ctor and runOperations loop
  Chris Gibb: stop clearing queue
  Chris Gibb: created operation to load last open project
  Chris Gibb: Merge pull request #513 from chgibb/beta-staging Bumped to 0.0.50-beta.1
  Chris Gibb: fixed typo
  Chris Gibb: Show path to project file if external
  Chris Gibb: Merge branch ‘master’ into 447
  Chris Gibb: Updated
  Chris Gibb: removed old code
  Chris Gibb: stop subscribing to alignments
  Chris Gibb: Merge pull request #514 from chgibb/447 Revamped File Importing and Project Exporting
  Chris Gibb: Merge branch ‘beta-staging’ into master
  Chris Gibb: Merge branch ‘456’ into master
  Chris Gibb: Merge pull request #519 from chgibb/master Update Feature Branch
  Chris Gibb: revamped css
  Chris Gibb: rewrote tables
  Chris Gibb: allow selecting and unselecting of one fastq
  Chris Gibb: change td based on selection. Allow selecting 2nd fastq
  Chris Gibb: Enabled refseq selection
  Chris Gibb: dont render unchecked or unindexed files
  Chris Gibb: refactored saving of selected samples and refs
  Chris Gibb: show selection and run button when valid selection is entered
  Chris Gibb: subscribe to operations
  Chris Gibb: forward operations to view
  Chris Gibb: show currently running alignment
  Chris Gibb: Added oncompletion handler
  Chris Gibb: broadcast oncomplete
  Chris Gibb: removed old handlers
  Chris Gibb: moved menu items into window menu
  Chris Gibb: removed old code
  Chris Gibb: changed default width and height
  Chris Gibb: Merge pull request #520 from chgibb/456 456, 455
  Chris Gibb: Merge pull request #521 from chgibb/master 456, 455
  Chris Gibb: Bumped to 0.0.50-beta.2
  Chris Gibb: Merge branch ‘beta’ into beta-staging
  Chris Gibb: Merge pull request #522 from chgibb/beta-staging 456, 455
  chgibb: Fixed window icons on windows
  Chris Gibb: Merge pull request #525 from chgibb/448 448
  Chris Gibb: Merge branch ‘beta-staging’ into master
  Chris Gibb: Merge pull request #526 from chgibb/master 448
  Chris Gibb: Bumped to 0.0.50-beta.3
  Chris Gibb: Merge branch ‘beta’ into beta-staging
  Chris Gibb: Merge pull request #527 from chgibb/beta-staging 448
  Chris Gibb: added config to docs
  Chris Gibb: Set theme jekyll-theme-slate
  Chris Gibb: added index
  Chris Gibb: Merge branch ‘master’ of https://github.com/chgibb/phat
  Chris Gibb: added name
  Chris Gibb: added title and readme content
  Chris Gibb: removed content
  Chris Gibb: Set theme jekyll-theme-slate
  Chris Gibb: bumped
  Chris Gibb: added imports
  Chris Gibb: set activeHover on elements
  chgibb: fixed active hover
  chgibb: refactored to wait for window load
  Chris Gibb: added index for latest stable
  Chris Gibb: fixed link
  Chris Gibb: changed kramdown config to gfm
  Chris Gibb: added test text
  Chris Gibb: removed header
  Chris Gibb: bumped
  Chris Gibb: script to cut new beta releases
  Chris Gibb: removed test bullets
  Chris Gibb: Created release index template and generator
  Chris Gibb: export function
  Chris Gibb: refactored into one entry point
  Chris Gibb: added walk
  Chris Gibb: added doc link to release template
  Chris Gibb: added test pages
  Chris Gibb: started all releases template
  Chris Gibb: started doc generator
  Chris Gibb: fixed links
  Chris Gibb: test doc deployment for new version
  Chris Gibb: fixed links
  Chris Gibb: regenerated
  Chris Gibb: added home links
  Chris Gibb: regenerated
  Chris Gibb: added contents link to bottom
  Chris Gibb: regenerated
  Chris Gibb: fixed errors and test generation
  Chris Gibb: added link to release history
  Chris Gibb: removed releases
  Chris Gibb: fixed link and regened
  Chris Gibb: fixed link and regened
  Chris Gibb: removed generated files
  Chris Gibb: regened
  Chris Gibb: removed releases
  Chris Gibb: made link smaller
  Chris Gibb: Merge branch ‘master’ into 449
  Chris Gibb: Merge pull request #528 from chgibb/449 449
  Chris Gibb: Merge branch ‘beta-staging’ into master
  Chris Gibb: removed word
  Chris Gibb: changed link location and fixed linebreak
  Chris Gibb: added comments
  Chris Gibb: added comments
  Chris Gibb: fixed changelog
  Chris Gibb: removed release
  Chris Gibb: removed logging
  Chris Gibb: Merge branch ‘master’ of https://github.com/chgibb/phat
  Chris Gibb: Merge pull request #529 from chgibb/master 449
  Chris Gibb: Merge branch ‘beta’ into beta-staging
  Chris Gibb: migrated wiki pages
  Chris Gibb: fixed filename
  Chris Gibb: Bumped to 0.0.50-beta.4
  Chris Gibb: updated changelog
  Chris Gibb: proto module to add commits to bottom of changelog on release
  Chris Gibb: migrated docs to new repo
  Chris Gibb: migrated template to new repo
  Chris Gibb: Merge pull request #530 from chgibb/beta-staging 449
  Chris Gibb: Updated package-lock.json
  Chris Gibb: Added .fna to filter
  Chris Gibb: Fixed formatting
  Chris Gibb: Added .fas to filter
  Chris Gibb: Added .seq to filter
  Chris Gibb: Added .fsa to filter
  Chris Gibb: Merge pull request #534 from chgibb/beta Promote 0.0.50-beta.4 to 0.0.50
  chgibb: delay resolution
  Chris Gibb: Merge pull request #535 from chgibb/451 451
  Chris Gibb: Merge pull request #536 from chgibb/stable-staging Promote 0.0.50-beta.4 to 0.0.50
  Chris Gibb: Merge branch ‘beta-staging’ into master
  Chris Gibb: Promoted to 0.0.50
  Chris Gibb: Merge branch ‘stable’ into stable-staging
  Chris Gibb: Merge pull request #538 from chgibb/stable-staging Promoted to 0.0.50
  Chris Gibb: Merge pull request #537 from chgibb/master 451
  Chris Gibb: Bumped to 0.0.51-beta.1
  Chris Gibb: Merge branch ‘beta’ into beta-staging
  Chris Gibb: Merge pull request #539 from chgibb/beta-staging 451
  Chris Gibb: increased delay
  Chris Gibb: Bumped
  Chris Gibb: Removed ref seq option
  Chris Gibb: Added goback button
  Chris Gibb: added click handler for goback button
  Chris Gibb: added class to button
  Chris Gibb: added startup time printing to main process
  Chris Gibb: Added button to snp positions table
  Chris Gibb: export function
  Chris Gibb: Added additional check for beta channel updates
  Chris Gibb: Merge pull request #541 from chgibb/463 540, 459
  Chris Gibb: Merge branch ‘beta-staging’ into master
  Chris Gibb: Updated comment
  Chris Gibb: rebuild runtime directory and force r/w permissions on open
  Chris Gibb: fixed abs path in qcreport
  Chris Gibb: started sorting options
  Chris Gibb: Merge pull request #542 from chgibb/master 540, 459
  Chris Gibb: Bumped to 0.0.51-beta.2
  Chris Gibb: Merge branch ‘beta’ into beta-staging
  chgibb: Fixed install script on cygwin
  chgibb: Fixed for cygwin
  chgibb: removed trailing char
  chgibb: Removed QCReport prop
  chgibb: Moved to using method to load QCreport over path prop
  Chris Gibb: Merge pull request #544 from chgibb/beta-staging 540, 459
  Chris Gibb: Merge branch ‘master’ into 463
  Chris Gibb: Updated
  Chris Gibb: Remove original project after exporting
  Chris Gibb: Merge pull request #545 from chgibb/463 Fix for Broken QC Reports in Exported Projects
  Chris Gibb: Merge pull request #546 from chgibb/master Update Feature Branch
  Chris Gibb: Update README.md
  Chris Gibb: Updated
  Chris Gibb: Merge branch ‘master’ into deleteOnExport
  Chris Gibb: Fixed flag init and added logging
  Chris Gibb: Fixed conditions
  Chris Gibb: Merge pull request #548 from chgibb/531 531
  Chris Gibb: Merge pull request #547 from chgibb/deleteOnExport Delete on export
  Chris Gibb: Merge branch ‘beta-staging’ into master
  Chris Gibb: Merge pull request #549 from chgibb/master 531, Delete on Export
  Chris Gibb: Bumped to 0.0.51-beta.3
  Chris Gibb: Merge branch ‘beta’ into beta-staging
  Chris Gibb: Merge pull request #550 from chgibb/beta-staging 543, 531, Delete on Export
  Chris Gibb: Bumped to 0.0.51
  Chris Gibb: Merge branch ‘stable-staging’ into beta
  Chris Gibb: Merge pull request #553 from chgibb/beta Promote 0.0.51-beta.3 to 0.0.51
  Chris Gibb: Merge branch ‘stable’ into stable-staging
  Chris Gibb: Merge pull request #554 from chgibb/stable-staging Promote 0.0.51-beta.3 to 0.0.51